3depict
Valued point cloud visualisation and analysis
Achilles Life Simulator
Watch a simulation of artificial life and evolution
Adun
Biomolecular Simulator
Aghermann
Manage EEG recordings, view and score EDF files, and simulate Process S
Edfhed
EDF file header editor
FreeCAD
Feature based Parametric Modeler

AlgoBox
Algorithm creation and execution helper
AltOS UI
View and log downlink data from Altus Metrum products
MicroPeak
View and log data from MicroPeak altimeters
TeleGPS
View and log data from TeleGPS tracking devices

Amide
analysis tool for medical images
ARB
Visit http://www.arb-home.de

Avogadro
Molecular Graphics and Modelling System
AWeather
Advanced weather reporting program
BASIC-256
Learn BASIC in an environment designed for young children

Biogenesis
artificial life program that simulates the processes involved in the evolution of organisms

BKchem
Chemical drawing tool

Cadabra
Computer algebra system for field theory problems
Cain
simulations of chemical reactions

Cantor
KDE Frontend to Mathematical Software

Celestia (GLUT)
Explore the Universe in this detailed space simulation

Chemtool
The molecules drawing program (2D)

Cirkuit
A program to draw circuits and diagrams
Clustal X
Global multiple nucleotide or peptide sequence alignment and phylogenetic analysis

code-aster-gui
Graphical command editor for Code_Aster.

CoqIDE Proof Assistant
Graphical interface for the Coq proof assistant
Engauge Digitizer 12.1
Extract data from graphs

Critterding
Petri dish universe in 3D that demonstrates evolving artificial life
CTSim Computed Tomography Simulator
Simulate the process of X-ray Computed Tomography
Engauge Digitizer 10.7
Extract data from graphs
Engauge Digitizer 10.11
Extract data from graphs

Dozzaqueux
Simulator for chemical mixtures

DRAWxtl
Display crystal structures

OpenDX Data Explorer
Visualize scientific, engineering and analytical data

EasyChem Chemical Structures Editor
Create high-quality chemical formulas
Eficas
Graphical command editor for Code_Aster.

ELKI
Data mining algorithm development framework
EMBOSS Explorer
Starts the default web browser on the local EMBOSS Explorer website.
Engauge-digitizer
Extract data from graphs
Epigrass
Epidemics Simulator
Euler
An interactive mathematical program
Engauge Digitizer 10.2
Extract data from graphs
expEYES Manual
expEYES User Manual
expEYES Junior Manual
expEYES Junior User Manual
expEYES Junior Programmer Manual
expEYES Junior Programmer Manual
ExpEYES Junior
EXPEYES Junior
expEYES
hardware & software framework for developing science experiments