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Application category Biology

Achilles Life Simulator icon

Achilles Life Simulator

Watch a simulation of artificial life and evolution

Adun

Biomolecular Simulator

ARB

Visit http://www.arb-home.de

Cain

simulations of chemical reactions

Clustal X

Global multiple nucleotide or peptide sequence alignment and phylogenetic analysis

EMBOSS Explorer

Starts the default web browser on the local EMBOSS Explorer website.
Garlic Protein Visualization icon

Garlic Protein Visualization

Visualize and investigate proteins and some geometric objects
GENtle icon

GENtle

Suite to plan genetic cloning

ImageJ

Image processing and analysis

Jemboss

Graphical user interface for the European Molecular Biology Open Software Suite.
Mauve icon

Mauve

Multiple Genome Aligner
LTRsift icon

LTRsift

A graphical tool for postprocessing and classification of LTR retrotransposons.

massXpert

Bio-polymer modelling and mass spectrometry data simulation software

Melting

"Computes the melting temperature for a nucleic acid duplex."
Cn3D NCBI Database Viewer icon

Cn3D NCBI Database Viewer

View NCBI databases in 3D
Sequin DNA Sequence Submission Tool icon

Sequin DNA Sequence Submission Tool

Submit DNA sequences to the GenBank, EMBL, and DDBJ databases
DDV Sequence Alignment Viewer icon

DDV Sequence Alignment Viewer

View multiple sequence alignment for GenBank
Entrez NCBI Database Querying Tool icon

Entrez NCBI Database Querying Tool

Query NCBI databases and retrieve documents
OneD Biological Sequence Viewer icon

OneD Biological Sequence Viewer

View single biological sequences

NJplot

Displays, modifies and exports in PostScript format phylogenetic trees
OpenCFU icon

OpenCFU

A modern program to count circular objects from pictures or webcams

PerlPrimer

Graphical design of primers for PCR and sequencing

Plasmidomics

Tool for drawing of plasmids and vector maps
RasMol (GTK version) icon

RasMol (GTK version)

View macro-molecules and prepare publication-quality images of them
SeaView icon

SeaView

Edits multiple sequence alignments and prints them in PostScript format.

gap4

Staden gap4 assembly editor

gap5

Staden gap5 assembly editor

pregap4

Staden pregap4 DNA preprocessor

trev

Staden trev program
TreeView X icon

TreeView X

Displays, modifies, prints and exports in SVG format phylogenetic trees

NJplot (unrooted)

Displays and exports in PostScript format unrooted phylogenetic trees

Artemis Comparison Tool

Pairwise comparison of DNA sequences

BamView

Visualize Genome-Sequencing Read Alignment Data

DNAPlotter

Make circular plots of DNA sequences
Dawg icon

Dawg

Sequence Evolution Simulator
FastQC quality control icon

FastQC quality control

quality control for high throughput sequence data
GenBank Submission Template Editor icon

GenBank Submission Template Editor

Edit GenBank submission templates, as used by Sequin.
OpenBabel icon

OpenBabel

Convert between many known molecule data formats
RasMol (classic version) icon

RasMol (classic version)

View macro-molecules and prepare publication-quality images of them
IQmol icon

IQmol

Visualize and animate molecules

TOPPAS

an workflow engine for mass spectrometry data analysis

TOPPView

viewer for mass spectrometry data

INIFileEditor

An editor for OpenMS configuration files.

OpenViBE VRPN Simulator

Test VRPN connections

OpenViBE Acquisition Server

Forward signal from signal aquisition hardware

OpenViBE Designer

Create, edit and execute OpenVibe scenarios

mineXpert

Mass spectrometry data analysis and mining (mass spectrum analysis)

Artemis

Genome Browser and Annotation Tool

Scoary

Pangenome-wide association studies
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