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bowtie - Ultrafast memory-efficient short read aligner

This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
1.2.3
Ubuntu iconUbuntu 19.10
1.2.2
Debian iconDebian 10.0
Ubuntu iconUbuntu 18.04 LTS
Ubuntu iconUbuntu 18.10
Ubuntu iconUbuntu 19.04
1.2.0
Ubuntu iconUbuntu 17.10
1.1.2
Debian iconDebian 9.0
Ubuntu iconUbuntu 16.04 LTS
1.0.1
Fedora iconFedora 28
Fedora iconFedora 29
Fedora iconFedora 30
Fedora iconFedora rawhide
DistributionVersionSincePackageInstalledPackager
Debian iconDebian 10.0 buster/maindeb1.2.2+dfsg-4Jan 121.59 MiB6.92 MiB
Debian iconDebian 9.0 stretch/maindeb1.1.2-62017-11-101.54 MiB6.66 MiB
Fedora iconFedora 28 releases/Everything-osrpm1.0.1-10.fc28Jan 146.92 MiB13 MiBFedora Project
Fedora iconFedora 29 releases/Everything-osrpm1.0.1-11.fc29Jan 146.91 MiB13 MiBFedora Project
Fedora iconFedora 29 releases-test/Everything-osrpm1.0.1-11.fc29Jan 146.91 MiB13 MiBFedora Project
Fedora iconFedora 30 releases/Everything-osrpm1.0.1-12.fc30Jun 176.95 MiB13.4 MiBFedora Project
Fedora iconFedora rawhide development/Everything-osrpm1.0.1-12.fc30Feb 126.95 MiB13.4 MiBFedora Project
Ubuntu iconUbuntu 17.10 artful/universedeb1.2.0+dfsg-12017-11-101.54 MiB6.69 MiB
Ubuntu iconUbuntu 18.04 LTS bionic/universedeb1.2.2+dfsg-22018-01-311.61 MiB7 MiB
Ubuntu iconUbuntu 18.10 cosmic/universedeb1.2.2+dfsg-3Jan 141.61 MiB7 MiB
Ubuntu iconUbuntu 19.04 disco/universedeb1.2.2+dfsg-4Jan 141.6 MiB7.01 MiB
Ubuntu iconUbuntu 19.10 eoan/universedeb1.2.3+dfsg-1Jul 121.76 MiB7.95 MiB
Ubuntu iconUbuntu 16.04 LTS xenial/universedeb1.1.2-32017-11-101.3 MiB6.23 MiB

Manual pages

bowtie(1)

bowtie-align-s - ultrafast memory-efficient short read aligner

bowtie-build(1)

bowtie-build - building a colorspace index for bowtie

bowtie-inspect(1)

bowtie-inspect - extracts information from a bowtie index

Latest updates

Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 1.2.3+dfsg-1 reintroduced

16:55
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 1.2.3+dfsg-1 removed

14:23
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 1.2.3+dfsg-1 reintroduced

Yesterday
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 1.2.3+dfsg-1 removed

Yesterday
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 1.2.3+dfsg-1 reintroduced

Yesterday
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 1.2.3+dfsg-1 removed

Yesterday
Ubuntu 19.10 icon

Ubuntu 19.10 eoan-proposed/universe: Version 1.2.3+dfsg-1 removed

0 - 09:30
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Updated from 1.2.2+dfsg-4 to 1.2.3+dfsg-1

Jul 12
Ubuntu 19.10 icon

Ubuntu 19.10 eoan-proposed/universe: Version 1.2.3+dfsg-1 introduced

Jul 11
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 1.2.2+dfsg-4 reintroduced

Jun 20
Andreas Tille
  • spelling
  • Upload to unstable
Dylan Aïssi
  • Update metadata: Add bio.tools ref
Alexandre Mestiashvili
  • Add patch fixing FTBFS, thanks to ch4rr0 at github.com Closes: #906341
  • Check for DEB_BUILD_OPTIONS and nocheck
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 1.2.2+dfsg-4 removed

Jun 20
Fedora 30 icon

Fedora 30 releases/Everything-os: Version 1.0.1-12.fc30 introduced

Jun 17
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 1.2.2+dfsg-4 introduced

Jun 17
Andreas Tille
  • spelling
  • Upload to unstable
Dylan Aïssi
  • Update metadata: Add bio.tools ref
Alexandre Mestiashvili
  • Add patch fixing FTBFS, thanks to ch4rr0 at github.com Closes: #906341
  • Check for DEB_BUILD_OPTIONS and nocheck
Fedora rawhide icon

Fedora rawhide development/Everything-os: Updated from 1.0.1-11.fc29 to 1.0.1-12.fc30

Feb 12
Fedora rawhide icon

Fedora rawhide development/Everything-os: Version 1.0.1-11.fc29 reintroduced

Jan 16
Fedora rawhide icon

Fedora rawhide development/Everything-os: Version 1.0.1-11.fc29 removed

Jan 15
Ubuntu 19.04 icon

Ubuntu 19.04 disco/universe: Version 1.2.2+dfsg-4 introduced

Jan 14
Andreas Tille
  • spelling
  • Upload to unstable
Dylan Aïssi
  • Update metadata: Add bio.tools ref
Alexandre Mestiashvili
  • Add patch fixing FTBFS, thanks to ch4rr0 at github.com Closes: #906341
  • Check for DEB_BUILD_OPTIONS and nocheck
Fedora rawhide icon

Fedora rawhide development/Everything-os: Updated from 1.0.1-10.fc28 to 1.0.1-11.fc29

Jan 14
Fedora 29 icon

Fedora 29 releases-test/Everything-os: Version 1.0.1-11.fc29 introduced

Jan 14
Fedora 29 icon

Fedora 29 releases/Everything-os: Version 1.0.1-11.fc29 introduced

Jan 14

Related packages

bowtie-debuginfo - Debug information for package bowtie
bowtie-debugsource - Debug sources for package bowtie
bowtie-examples - Examples for bowtie, the ultrafast memory-efficient short read aligner
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