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macs - Model-based Analysis of ChIP-Seq on short reads sequencers

MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples.
2.1.2.1
Debian iconDebian 10.0
Ubuntu iconUbuntu 19.04
Ubuntu iconUbuntu 19.10
2.1.1.20160309
Debian iconDebian 9.0
Ubuntu iconUbuntu 17.10
Ubuntu iconUbuntu 18.04 LTS
Ubuntu iconUbuntu 18.10
2.1.0.20151222
Ubuntu iconUbuntu 16.04 LTS
DistributionVersionSincePackageInstalledPackager
Debian iconDebian 10.0 buster/maindeb2.1.2.1-12019-01-122.34 MiB5.42 MiB
Debian iconDebian 9.0 stretch/maindeb2.1.1.20160309-12017-11-10987 kiB3.54 MiB
Ubuntu iconUbuntu 17.10 artful/universedeb2.1.1.20160309-1build12017-11-101.1 MiB3.88 MiB
Ubuntu iconUbuntu 18.04 LTS bionic/universedeb2.1.1.20160309-22018-02-262.36 MiB5.38 MiB
Ubuntu iconUbuntu 18.10 cosmic/universedeb2.1.1.20160309-22019-01-142.36 MiB5.38 MiB
Ubuntu iconUbuntu 19.04 disco/universedeb2.1.2.1-12019-01-142.33 MiB5.41 MiB
Ubuntu iconUbuntu 19.10 eoan/universedeb2.1.2.1-12019-06-172.33 MiB5.41 MiB
Ubuntu iconUbuntu 16.04 LTS xenial/universedeb2.1.0.20151222-12017-11-10984 kiB3.56 MiB

Manual pages

macs2(1)

Traceback - macs2 - Model-based Analysis for ChIP-Sequencing

macs2_bdgbroadcall(1)

macs2_bdgbroadcall - Model-based Analysis for ChIP-Sequencing

macs2_bdgcmp(1)

macs2_bdgcmp - Model-based Analysis for ChIP-Sequencing

macs2_bdgdiff(1)

macs2_bdgdiff - Model-based Analysis for ChIP-Sequencing

macs2_bdgopt(1)

macs2_bdgopt - Model-based Analysis for ChIP-Sequencing

macs2_bdgpeakcall(1)

macs2_bdgpeakcall - Model-based Analysis for ChIP-Sequencing

macs2_callpeak(1)

macs2_callpeak - Model-based Analysis for ChIP-Sequencing

macs2_cmbreps(1)

macs2_cmbreps - Model-based Analysis for ChIP-Sequencing

macs2_filterdup(1)

macs2_filterdup - Model-based Analysis for ChIP-Sequencing

macs2_pileup(1)

macs2_pileup - Model-based Analysis for ChIP-Sequencing

macs2_predictd(1)

macs2_predictd - Model-based Analysis for ChIP-Sequencing

macs2_randsample(1)

macs2_randsample - Model-based Analysis for ChIP-Sequencing

macs2_refinepeak(1)

macs2_refinepeak - Model-based Analysis for ChIP-Sequencing

Latest updates

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Ubuntu 20.04 focal-proposed/universe: Version 2.2.6-3 removed

2020-01-31
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Ubuntu 20.04 focal/universe: Version 2.2.4-1 removed

2020-01-31
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Ubuntu 20.04 focal-proposed/universe: Version 2.2.6-3 introduced

2020-01-07
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Ubuntu 20.04 focal/universe: Version 2.2.4-1 introduced

2020-01-07
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Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 reintroduced

2019-10-10
Jelmer Vernooij
  • Use secure URI in Homepage field.
Michael R. Crusoe
  • New upstream release
  • Drop spelling patch (incorporated upstream)
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 removed

2019-10-10
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 reintroduced

2019-10-10
Jelmer Vernooij
  • Use secure URI in Homepage field.
Michael R. Crusoe
  • New upstream release
  • Drop spelling patch (incorporated upstream)
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 removed

2019-10-10
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 reintroduced

2019-09-25
Jelmer Vernooij
  • Use secure URI in Homepage field.
Michael R. Crusoe
  • New upstream release
  • Drop spelling patch (incorporated upstream)
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 removed

2019-09-25
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 reintroduced

2019-09-25
Jelmer Vernooij
  • Use secure URI in Homepage field.
Michael R. Crusoe
  • New upstream release
  • Drop spelling patch (incorporated upstream)
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 removed

2019-09-25
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 reintroduced

2019-09-06
Jelmer Vernooij
  • Use secure URI in Homepage field.
Michael R. Crusoe
  • New upstream release
  • Drop spelling patch (incorporated upstream)
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 removed

2019-09-06
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 reintroduced

2019-09-06
Jelmer Vernooij
  • Use secure URI in Homepage field.
Michael R. Crusoe
  • New upstream release
  • Drop spelling patch (incorporated upstream)
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 removed

2019-09-06
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 reintroduced

2019-09-06
Jelmer Vernooij
  • Use secure URI in Homepage field.
Michael R. Crusoe
  • New upstream release
  • Drop spelling patch (incorporated upstream)
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 removed

2019-09-06
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 reintroduced

2019-09-06
Jelmer Vernooij
  • Use secure URI in Homepage field.
Michael R. Crusoe
  • New upstream release
  • Drop spelling patch (incorporated upstream)
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.1.2.1-1 removed

2019-09-06
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