File formats used by the pftools
- Generalized profiles format and syntax.
- The multiple sequence alignment format (PSA).
- The extended header multiple sequence alignment format (XPSA).
pfmake
Build a profile from a multiple sequence alignment.
pfscaleFit parameters of an extreme-value distribution to a profile score list.
pfwWeight sequences of a multiple sequence alignment to correct for
sampling bias.
pfsearch / pfsearchV3
Search a protein or DNA sequence library for sequence segments matching
a profile (V3 is the new version of this tool).
Scan a protein or DNA sequence with a profile library
Conversion programspsa2msa
Reformat PSA file to Pearson/Fasta multiple sequence alignment file.
ptofConvert a protein profile into a frame-search profile to search DNA
sequences. To be used with 2ft.
Converts both strands of DNA into so-called interleaved
frame-translated DNA sequences to search with protein profiles. To be
used with ptof.
Translates all six reading frames of a double-stranded DNA sequence
into individual protein sequences.
Convert a profile in GCG format into PROSITE format.
pfhtopConvert a HMMER1 ASCII-formatted HMM into an equivalent PROSITE profile.
ptohConverts a generalized profile into an approximately equivalent HMM
profile in HMMER1 format (can be read by the hmmconvert program from
the HMMER2 package).
Original maintainer | Debian Med Packaging Team |
---|---|
Homepage | http://web.expasy.org/pftools/ |







Distribution | Version | Since | Package | Installed | Packager | |
---|---|---|---|---|---|---|
![]() | deb | 3+dfsg-3 | Jan 12 | 383 kiB | 1.17 MiB | Debian Med Packaging Team |
![]() | deb | 3+dfsg-3~bpo9+1 | Jan 12 | 384 kiB | 1.14 MiB | Debian Med Packaging Team |
![]() | deb | 3+dfsg-2build1 | 2017-11-10 | 385 kiB | 1.12 MiB | Ubuntu Developers |
![]() | deb | 3+dfsg-2build1 | 2017-11-10 | 385 kiB | 1.12 MiB | Ubuntu Developers |
![]() | deb | 3+dfsg-2build2 | Jan 14 | 383 kiB | 1.17 MiB | Ubuntu Developers |
![]() | deb | 3+dfsg-3 | Jan 14 | 383 kiB | 1.17 MiB | Ubuntu Developers |
![]() | deb | 3+dfsg-3 | Jun 17 | 383 kiB | 1.17 MiB | Ubuntu Developers |
Manual pages
2ft(1)
6ft(1)
pfdump(1)
pfgtop(1)
pfhtop(1)
pfmake(1)
pfscale(1)
pfscan(1)
pfsearch(1)
pfsearchV2(1)
pfsearchV3(1)
pfw(1)
psa2msa(1)
ptof(1)
ptoh(1)
Latest updates

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 reintroduced
- debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
Andreas Tille- debhelper 11
- Point Vcs fields to salsa.debian.org
- Standards-Version: 4.2.1
- d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 removed

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 reintroduced
- debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
Andreas Tille- debhelper 11
- Point Vcs fields to salsa.debian.org
- Standards-Version: 4.2.1
- d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 removed

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 reintroduced
- debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
Andreas Tille- debhelper 11
- Point Vcs fields to salsa.debian.org
- Standards-Version: 4.2.1
- d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 removed

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 reintroduced
- debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
Andreas Tille- debhelper 11
- Point Vcs fields to salsa.debian.org
- Standards-Version: 4.2.1
- d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 removed

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 reintroduced
- debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
Andreas Tille- debhelper 11
- Point Vcs fields to salsa.debian.org
- Standards-Version: 4.2.1
- d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 removed

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 reintroduced
- debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
Andreas Tille- debhelper 11
- Point Vcs fields to salsa.debian.org
- Standards-Version: 4.2.1
- d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 removed

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 reintroduced
- debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
Andreas Tille- debhelper 11
- Point Vcs fields to salsa.debian.org
- Standards-Version: 4.2.1
- d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 removed

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 reintroduced
- debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
Andreas Tille- debhelper 11
- Point Vcs fields to salsa.debian.org
- Standards-Version: 4.2.1
- d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 removed

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 reintroduced
- debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
Andreas Tille- debhelper 11
- Point Vcs fields to salsa.debian.org
- Standards-Version: 4.2.1
- d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 removed

Ubuntu 19.10 eoan/universe: Version 3+dfsg-3 reintroduced
- debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
Andreas Tille- debhelper 11
- Point Vcs fields to salsa.debian.org
- Standards-Version: 4.2.1
- d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog
