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python-htseq - Python high-throughput genome sequencing read analysis utilities

HTSeq can be used to performing a number of common analysis tasks when working with high-throughput genome sequencing reads:
  • Getting statistical summaries about the base-call quality scores to study the data quality.
  • Calculating a coverage vector and exporting it for visualization in a genome browser.
  • Reading in annotation data from a GFF file.
  • Assigning aligned reads from an RNA-Seq experiments to exons and genes.
This package contains the Python 2 module.
0.11.2
Debian iconDebian 10.0
Ubuntu iconUbuntu 19.04
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0.10.0
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0.6.1p1
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0.5.4p3
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DistributionVersionSincePackageInstalledPackager
Debian iconDebian 10.0 buster/maindeb0.11.2-1Jan 16226 kiB791 kiB
Debian iconDebian 9.0 stretch/maindeb0.6.1p1-42017-11-10183 kiB648 kiB
Ubuntu iconUbuntu 17.10 artful/universedeb0.6.1p1-4build12017-11-10198 kiB690 kiB
Ubuntu iconUbuntu 18.04 LTS bionic/universedeb0.6.1p1-4build12017-11-10198 kiB690 kiB
Ubuntu iconUbuntu 18.10 cosmic/universedeb0.10.0-1build1Jan 14224 kiB782 kiB
Ubuntu iconUbuntu 19.04 disco/universedeb0.11.2-1Jan 14226 kiB791 kiB
Ubuntu iconUbuntu 19.10 eoan/universedeb0.11.2-1Jun 17226 kiB791 kiB
Ubuntu iconUbuntu 16.04 LTS xenial/universedeb0.5.4p3-22017-11-10199 kiB660 kiB

Latest updates

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Ubuntu 19.10 eoan/universe: Version 0.11.2-1 reintroduced

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Ubuntu 19.10 eoan/universe: Version 0.11.2-1 removed

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  • debhelper 12
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Ubuntu 19.10 eoan/universe: Version 0.11.2-1 removed

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Ubuntu 19.10 eoan/universe: Version 0.11.2-1 reintroduced

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Ubuntu 19.10 eoan/universe: Version 0.11.2-1 removed

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Ubuntu 19.10 eoan/universe: Version 0.11.2-1 reintroduced

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  • New upstream version
  • debhelper 12
  • Standards-Version: 4.3.0
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Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 0.11.2-1 removed

0 - 14:33
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 0.11.2-1 reintroduced

Aug 01
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Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 0.11.2-1 removed

Aug 01
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Ubuntu 19.10 eoan/universe: Version 0.11.2-1 reintroduced

Jul 18
  • New upstream version
  • debhelper 12
  • Standards-Version: 4.3.0
  • Secure URI in copyright format
  • Drop ancient X-Python-Version field
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 0.11.2-1 removed

Jul 18
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 0.11.2-1 reintroduced

Jul 18
  • New upstream version
  • debhelper 12
  • Standards-Version: 4.3.0
  • Secure URI in copyright format
  • Drop ancient X-Python-Version field
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 0.11.2-1 removed

Jul 18
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 0.11.2-1 reintroduced

Jul 18
  • New upstream version
  • debhelper 12
  • Standards-Version: 4.3.0
  • Secure URI in copyright format
  • Drop ancient X-Python-Version field
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 0.11.2-1 removed

Jul 18
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 0.11.2-1 reintroduced

Jun 20
  • New upstream version
  • debhelper 12
  • Standards-Version: 4.3.0
  • Secure URI in copyright format
  • Drop ancient X-Python-Version field
Ubuntu 19.10 icon

Ubuntu 19.10 eoan/universe: Version 0.11.2-1 removed

Jun 20
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Ubuntu 19.10 eoan/universe: Version 0.11.2-1 introduced

Jun 17
  • New upstream version
  • debhelper 12
  • Standards-Version: 4.3.0
  • Secure URI in copyright format
  • Drop ancient X-Python-Version field
Debian 10.0 icon

Debian 10.0 buster/main: Updated from 0.10.0-1+b1 to 0.11.2-1

Jan 16
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Related packages

python - interactive high-level object-oriented language (default version)
python-htseq-doc - documetation for HTSeq (high-throughput genome sequencing)
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