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rna-star - ultrafast universal RNA-seq aligner

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.
2.7.3a
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2.7.1a
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2.7.0a
Debian iconDebian 10.0
Debian iconDebian 9.0
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2.6.1a
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2.5.4b
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2.5.3a
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2.5.2b
Debian iconDebian 9.0
2.5.0a
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DistributionVersionSincePackageInstalledPackager
Debian iconDebian 10.0 buster/maindeb2.7.0a+dfsg-12019-02-01437 kiB1010 kiB
Debian iconDebian 9.0 stretch/maindeb2.5.2b+dfsg-12017-11-10357 kiB810 kiB
Debian iconDebian 9.0 stretch-backports/maindeb2.7.0a+dfsg-1~bpo9+12019-06-17444 kiB1020 kiB
Ubuntu iconUbuntu 17.10 artful/universedeb2.5.3a+dfsg-32017-11-10362 kiB830 kiB
Ubuntu iconUbuntu 18.04 LTS bionic/universedeb2.5.4b+dfsg-12018-02-26371 kiB855 kiB
Ubuntu iconUbuntu 18.10 cosmic/universedeb2.6.1a+dfsg-12019-01-14397 kiB917 kiB
Ubuntu iconUbuntu 19.04 disco/universedeb2.7.0a+dfsg-12019-01-30428 kiB1000 kiB
Ubuntu iconUbuntu 19.10 eoan/universedeb2.7.1a+dfsg-22019-07-18443 kiB1.02 MiB
Ubuntu iconUbuntu 20.04 focal/universedeb2.7.3a+dfsg-1build22020-03-23485 kiB1.13 MiB
Ubuntu iconUbuntu 16.04 LTS xenial/universedeb2.5.0a+dfsg-12017-11-10339 kiB776 kiB

Manual pages

STAR(1)

STAR - ultrafast universal RNA-seq aligner

Latest updates

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Ubuntu 20.04 focal-proposed/universe: Version 2.7.3a+dfsg-1build2 removed

2020-03-23
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Ubuntu 20.04 focal/universe: Updated from 2.7.3a+dfsg-1build1 to 2.7.3a+dfsg-1build2

2020-03-23
  • No-change rebuild for libgcc-s1 package name change.
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Ubuntu 20.04 focal-proposed/universe: Version 2.7.3a+dfsg-1build2 introduced

2020-03-22
  • No-change rebuild for libgcc-s1 package name change.
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Ubuntu 20.04 focal-proposed/universe: Version 2.7.3a+dfsg-1build1 removed

2020-02-12
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Ubuntu 20.04 focal/universe: Updated from 2.7.3a+dfsg-1 to 2.7.3a+dfsg-1build1

2020-02-12
  • No-change upload for libhts soname change.
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Ubuntu 20.04 focal-proposed/universe: Version 2.7.3a+dfsg-1build1 introduced

2020-02-01
  • No-change upload for libhts soname change.
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Ubuntu 20.04 focal/universe: Version 2.7.3a+dfsg-1 introduced

2020-01-07
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Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 reintroduced

2019-10-10
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Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 removed

2019-10-10
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Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 reintroduced

2019-10-10
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Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 removed

2019-10-10
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Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 reintroduced

2019-09-25
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Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 removed

2019-09-25
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 reintroduced

2019-09-25
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 removed

2019-09-25
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 reintroduced

2019-09-06
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 removed

2019-09-06
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Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 reintroduced

2019-09-06
Ubuntu icon

Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 removed

2019-09-06
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Ubuntu 19.10 eoan/universe: Version 2.7.1a+dfsg-2 reintroduced

2019-09-06

Related packages

star - tar implementation compliant to POSIX.1-2001
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